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Benchmark

  • CHM13hTERT human cell line with 120x Oxford Nanopore data
  • Arabidopsis thaliana with 192X PacBio CLR data (~1% heterozygosity)
  • Drosophila melanogaster with 69X Oxford Nanopore data
  • More data
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  • Benchmarking data used in NextDenovo Paper
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Benchmarking data used in NextDenovo PaperΒΆ

  1. Data used in error correction
  • simulated data
    • ont.raw.fa.gz
    • nextdenovo.cns.fa.gz
    • necat.cns.fa.gz
    • canu.cns.fa.gz
  • actual biological data
    • canu.cns.fa.gz
    • necat.cns.fa.gz
    • nextdenovo.cns.fa.gz
    • ont.raw.fa.gz
  1. Data used in assembly
  • Arabidopsis thaliana
    • canu.polished.fa
    • canu.raw.fa
    • flye.polished.fa
    • flye.raw.fa
    • necat.polished.fa
    • necat.raw.fa
    • nextdenovo.polished.fa
    • nextdenovo.raw.fa
    • wtdbg.polished.fa
    • wtdbg.raw.fa
  • Drosophila melanogaster
    • canu.polished.fa
    • canu.raw.fa
    • flye.polished.fa
    • flye.raw.fa
    • necat.polished.fa
    • necat.raw.fa
    • nextdenovo.polished.fa
    • nextdenovo.raw.fa
    • wtdbg.polished.fa
    • wtdbg.raw.fa
  • Oryza sativa
    • canu.polished.fa
    • canu.raw.fa
    • flye.polished.fa
    • flye.raw.fa
    • necat.polished.fa
    • necat.raw.fa
    • nextdenovo.polished.fa
    • nextdenovo.raw.fa
    • wtdbg.polished.fa
    • wtdbg.raw.fa
  • Zea mays
    • canu.polished.fa
    • canu.raw.fa
    • flye.polished.fa
    • flye.raw.fa
    • necat.polished.fa
    • necat.raw.fa
    • nextdenovo.polished.fa
    • nextdenovo.raw.fa
    • wtdbg.polished.fa
    • wtdbg.raw.fa
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