nextdenovo
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Parameter Reference
Utilities
FAQ
Benchmark
CHM13hTERT human cell line with 120x Oxford Nanopore data
Arabidopsis thaliana with 192X PacBio CLR data (~1% heterozygosity)
Drosophila melanogaster with 69X Oxford Nanopore data
More data
nextdenovo
Index
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Index
A
|
B
|
C
|
D
|
G
|
H
|
I
|
J
|
K
|
M
|
N
|
O
|
P
|
R
|
S
|
T
|
U
|
W
A
assemble>
command line option
B
blocksize
command line option
C
check_alive
command line option
command line option
assemble>
blocksize
check_alive
correct
correction_options
deltmp
genome_size
hifi
input_fofn
input_type
job_id_regex
job_prefix
job_type
kill
minimap2_options_cns
minimap2_options_map
minimap2_options_raw
nextgraph_options
nodelist
ont}
pa_correction
parallel_jobs
read_cutoff
read_type
rerun
rewrite
seed_cutfiles
seed_cutoff
seed_depth
sort_options
submit
task
use_drmaa
usetempdir
workdir
correct
command line option
correction_options
command line option
D
deltmp
command line option
G
genome_size
command line option
H
hifi
command line option
I
input_fofn
command line option
input_type
command line option
J
job_id_regex
command line option
job_prefix
command line option
job_type
command line option
K
kill
command line option
M
minimap2_options_cns
command line option
minimap2_options_map
command line option
minimap2_options_raw
command line option
N
nextgraph_options
command line option
nodelist
command line option
O
ont}
command line option
P
pa_correction
command line option
parallel_jobs
command line option
R
read_cutoff
command line option
read_type
command line option
rerun
command line option
rewrite
command line option
S
seed_cutfiles
command line option
seed_cutoff
command line option
seed_depth
command line option
sort_options
command line option
submit
command line option
T
task
command line option
U
use_drmaa
command line option
usetempdir
command line option
W
workdir
command line option
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